hub Welcome to the Molecular Genetics and Bioinformatics Lab

Molecular Genetics & Bioinformatics

The Molecular Genetics and Bioinformatics Lab provides curated datasets and computational tools for microbial genetics research. The portal supports plate-image collection, pathogen classification, sequence analysis, and reproducible bioinformatics workflows for students, microbiologists, and clinical research teams.

apps

Software Showcase

Active Agar Plate Collector

add_photo_alternate Agar Plate Image Collector

Crowdsource and annotate microbiological plate images. Labels cover 20 common human pathogens, including sample medium, source, resistance profile, and notes. Used to train model checkpoints.

Uploads: 20 Classes: 3
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ML Model ASTpredict Detection

biotech ASTpredict Colony Counter

Real-time computer vision classifier utilizing YOLO. Detects, counts, and classifies bacterial colonies across 24 distinct pathogen families from agar plate image uploads.

Framework: YOLO v8 Classes: 24
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Active Virulent Prediction for Parasites

genetics Virulent Prediction for Parasites (ParaVirPred)

A tool to predict virulence factors in parasitic organisms using pre-trained machine learning models.

Domain: Parasite Virulence Pipeline: ML Ensemble
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Active Pathogen Virulence Prediction

bug_report Pathogen Virulence Prediction (PathoVirPred)

A comprehensive web server for predicting pathogen virulence using protein language models and physicochemical properties.

Domain: Pathogen Virulence Pipeline: ESM-2 / ProtT5
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Active GauAI Cattle Breed & Admixture Portal

pets GauAI

AI-driven cattle breed identification and continuous ancestry composition estimation for indigenous Indian cattle breeds using multi-model machine learning on genomic SNP data.

Domain: Cattle Genomics Pipeline: SVM & CatBoost
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groups

Research Group

workspace_premium Dr. Sandeep Kushwaha

Scientist-E
National Institute of Animal Biotechnology (NIAB), Hyderabad

Ph.D. Students

person Mr. Naveen Prasath

Research Interest: Bioinformatics approaches to decipher the Molecular Genetics of Bovine Disease Pathogenesis

person Ms. Preeti Devi

Research Interest: Integrating computational and experimental approaches to identify and validate druggable targets and discover lead compounds against bovine mastitis-causing pathogens

person Ms. Antisha Sarkar

Research Interest: Interrogating the vaginal and uterine microbiomes of non-obstructive (Repeat Breeder) cyclic Gir cows to understand microbial aspects of infertility

person Ms. Vinaya Majji

Research Interest: Understanding the molecular mechanisms that govern cellular resilience and adaptation to heat stress in indigenous and crossbred cattle.

person Mr. Santosh Nayak

Research Interest: Computer-Vision Based Framework for Antimicrobial Susceptibility Testing

menu_book Recent Laboratory Publications

Research generated using datasets and tools developed on this server:

  • "Decoding the diversity: a comprehensive sequence analysis of accessory viral protein W of Newcastle disease virus."
    Pachineella Lakshmana Rao SKMS, Venkataraman S, Dutta and Kushwaha S (2026)
    J. Biosci. 51 (34)
  • "Transcriptome analysis of goat adipose tissue-derived mesenchymal stem cells cultured in variable oxygen conditions."
    Vishwakarma U, Abraham M, Kori I, Chawade A, Kushwaha S and Goel S (2026)
    Front. Cell Dev. Biol. 14: 1814793
  • "Targeted Gut Delivery of Zn, Cu, and Mn Nanominerals Alleviates Oxidative Stress by Activating Endogenous SOD Enzymes."
    Bhagat S, Kushwaha S and Singh S (2026)
    Adv. Healthc. Mater. 15 (23): e71209
  • "Integrative machine learning approaches with genomic data for predicting antitubercular drug resistance: A systematic review and meta-analysis."
    Shrivastava R, Sharma K, Mishra S, Parihar P, Das G, Pandey KM and Kushwaha S (2026)
    J. Glob. Antimicrob. Resist. 46: 148–157
  • "Metatranscriptome Analysis to Unveil the Molecular Signature of Transcriptionally Active Pathogens Associated with Bovine Mastitis."
    Kushwaha S, Ummat BH, Tarique F and Chawade A (2025)
    Front. Vet. Sci. 12: 1642351

code Developer API Documentation

Integrate our models and dataset endpoints into your programmatic pipelines:

  • POST /predict
    Submit an image file under key files to count colonies and classify species. Optional: conf (0-1 float confidence threshold).
  • GET /stats
    Retrieve live collection stats, returning a JSON map containing total counts and counts grouped by species.

For raw API keys or rate-limit exceptions, please contact the laboratory director.

mail Contact Laboratory

For questions regarding our models, datasets, collaborations, or data deposit policies:

Scientist: Dr. Sandeep Kushwaha

Email: contact@mgblab

Physical Address: National Institute of Animal Biotechnology ; Hyderabad